chr4:24793175:T>G Detail (hg38)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr4:24,794,797-24,794,797 View the variant detail on this assembly version. |
| hg38 | chr4:24,793,175-24,793,175 |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.313 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | myocardial infarction | In GENEDIAB/GENESIS pooled cohorts, the minor T-allele of rs2284659 variant was ... | BeFree | 25855220 | Detail |
| <0.001 | Malignant neoplasm of breast | The gene-gene interactions demonstrated a significant four-variant interaction a... | BeFree | 25416100 | Detail |
| 0.026 | Malignant neoplasm of breast | The gene-gene interactions demonstrated a significant four-variant interaction a... | BeFree | 25416100 | Detail |
| <0.001 | breast carcinoma | The gene-gene interactions demonstrated a significant four-variant interaction a... | BeFree | 25416100 | Detail |
| 0.005 | breast carcinoma | The gene-gene interactions demonstrated a significant four-variant interaction a... | BeFree | 25416100 | Detail |
| <0.001 | Malignant neoplasm of breast | The gene-gene interactions demonstrated a significant four-variant interaction a... | BeFree | 25416100 | Detail |
| <0.001 | breast carcinoma | The gene-gene interactions demonstrated a significant four-variant interaction a... | BeFree | 25416100 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| In GENEDIAB/GENESIS pooled cohorts, the minor T-allele of rs2284659 variant was inversely associated... | DisGeNET | Detail |
| The gene-gene interactions demonstrated a significant four-variant interaction among rs406113 (GPX6)... | DisGeNET | Detail |
| The gene-gene interactions demonstrated a significant four-variant interaction among rs406113 (GPX6)... | DisGeNET | Detail |
| The gene-gene interactions demonstrated a significant four-variant interaction among rs406113 (GPX6)... | DisGeNET | Detail |
| The gene-gene interactions demonstrated a significant four-variant interaction among rs406113 (GPX6)... | DisGeNET | Detail |
| The gene-gene interactions demonstrated a significant four-variant interaction among rs406113 (GPX6)... | DisGeNET | Detail |
| The gene-gene interactions demonstrated a significant four-variant interaction among rs406113 (GPX6)... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs2284659 dbSNP
- Genome
- hg38
- Position
- chr4:24,793,175-24,793,175
- Variant Type
- snv
- Reference Allele
- T
- Alternative Allele
- G
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs2284659
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.3129
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 5244
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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